Run bedtools from ChatGPT or Claude
Tools for genome arithmetic (set theory on the genome). With BCD, ChatGPT, Claude and other AI apps can install and run bedtools on your own computer and read what it prints.
Works on
- MacWorks
Homebrew has a ready-made build; the AI can install it with
brew install bedtools. - LinuxWorks
Homebrew on Linux has a ready-made build.
- WindowsNot in Homebrew
Homebrew does not run on Windows. If bedtools has a Windows build, BCD can run it in PowerShell.
About bedtools
- Version
- 2.31.1
- License
- MIT
- Installs (last 365 days)
- 1,462 · #2,230 in Homebrew
- Homepage
- github.com/arq5x/bedtools2
- Install
brew install bedtools
Try asking
“Install bedtools with Homebrew and show me its version”
“Read bedtools --help and give me three useful examples for my files”
“Update bedtools and tell me what changed”
Depends on
Questions
Can ChatGPT run bedtools on my computer?
Yes. With BCD on your Mac or Linux computer and command permission turned on for it, ChatGPT runs bedtools there and reads the output. Claude and other apps with MCP connectors can too.
Do I need to install bedtools first?
No. If Homebrew is installed, the AI can run brew install bedtools for you.
Is it safe?
A new computer starts read-only: running commands is turned on per computer, and BCD reaches only the folders you allow.
Try it on your computer
BCD connects ChatGPT, Claude and other AI apps to your own Mac, Windows or Linux computer. One computer is free, with 20,000 tool calls a month and no card.
Program data from Homebrew, updated 2026-11-11. Installs are Homebrew's installs on request over the last 365 days.