Run hmmer from ChatGPT or Claude
Build profile HMMs and scan against sequence databases. With BCD, ChatGPT, Claude and other AI apps can install and run hmmer on your own computer and read what it prints.
Works on
- MacWorks
Homebrew has a ready-made build; the AI can install it with
brew install hmmer. - LinuxWorks
Homebrew on Linux has a ready-made build.
- WindowsNot in Homebrew
Homebrew does not run on Windows. If hmmer has a Windows build, BCD can run it in PowerShell.
About hmmer
- Version
- 3.4
- License
- BSD-3-Clause
- Installs (last 365 days)
- 720 · #3,080 in Homebrew
- Homepage
- hmmer.org
- Install
brew install hmmer
Try asking
“Install hmmer with Homebrew and show me its version”
“Read hmmer --help and give me three useful examples for my files”
“Update hmmer and tell me what changed”
Questions
Can ChatGPT run hmmer on my computer?
Yes. With BCD on your Mac or Linux computer and command permission turned on for it, ChatGPT runs hmmer there and reads the output. Claude and other apps with MCP connectors can too.
Do I need to install hmmer first?
No. If Homebrew is installed, the AI can run brew install hmmer for you.
Is it safe?
A new computer starts read-only: running commands is turned on per computer, and BCD reaches only the folders you allow.
Try it on your computer
BCD connects ChatGPT, Claude and other AI apps to your own Mac, Windows or Linux computer. One computer is free, with 20,000 tool calls a month and no card.
Program data from Homebrew, updated 2026-11-11. Installs are Homebrew's installs on request over the last 365 days.